PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0023s00880.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 234aa    MW: 25647.4 Da    PI: 6.0713
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0023s00880.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.86e-1176123454
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++  rE+ RRdr+N++f eL ++l +    + +K +Ka+iL  Av+ + +L
  Vradi0023s00880.1  76 SKACREKLRRDRLNDKFVELGSILEPG---RPPKTDKAAILMDAVRMVTQL 123
                        6789**********************8...89**************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.00872123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.40E-775128No hitNo description
Gene3DG3DSA:4.10.280.106.4E-1376145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-876123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-1377147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-878129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MVSPENSNWL FDYPLIDDDI AVGDGSFTVS ASAFSWPPPP SNVSVEIDAS LLDSDGLKDP  60
ALKKRGRSDS CTASSSKACR EKLRRDRLND KFVELGSILE PGRPPKTDKA AILMDAVRMV  120
TQLRDEAQKL KESTTSLQEK IKELKAEKNE LRDEKQRLKV EKEKLELQVK SMSAQPPFLP  180
PPPAIPAAFA PQAQAPGNKL VPFISYPGVA MWQFMPPAAV DTSQDHVLRP PVA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16167LKKRGRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311210.0KT031121.1 Glycine max clone HN_CCL_83 bHLH transcription factor (Glyma13g36260.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014522000.11e-168PREDICTED: transcription factor ILR3
SwissprotQ9FH371e-112ILR3_ARATH; Transcription factor ILR3
TrEMBLA0A0L9UMP51e-166A0A0L9UMP5_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SI051e-166A0A0S3SI05_PHAAN; Uncharacterized protein
STRINGGLYMA13G36260.11e-124(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16023486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.12e-82bHLH family protein